一、2020-2024 papers on nuclear protein by title only

1: Chen J, Li M, Lu H. Nuclear protein in testis carcinoma of the lung. Transl Oncol. 2023 Apr;30:101640. doi: 10.1016/j.tranon.2023.101640. Epub 2023 Feb 11. PMID: 36780749; PMCID: PMC9947104.

2: Kumar A, Mathew V, Stirling PC. Nuclear protein quality control in yeast: The latest INQuiries. J Biol Chem. 2022 Aug;298(8):102199. doi: 10.1016/j.jbc.2022.102199. Epub 2022 Jun 24. PMID: 35760103; PMCID: PMC9305344.

3: Saiki A, Sakamoto K, Bee Y, Izumo T. Nuclear protein of the testis midline carcinoma of the thorax. Jpn J Clin Oncol. 2022 May 31;52(6):531-538. doi: 10.1093/jjco/hyac033. PMID: 35325167; PMCID: PMC9157292.

4: Khan NH, Chen HJ, Fan Y, Surfaraz M, Ahammad MF, Qin YZ, Shahid M, Virk R, Jiang E, Wu DD, Ji XY. Biology of PEST-Containing Nuclear Protein: A Potential Molecular Target for Cancer Research. Front Oncol. 2022 Feb 4;12:784597. doi: 10.3389/fonc.2022.784597. PMID: 35186732; PMCID: PMC8855108.

5: Grochowska KM, Bär J, Gomes GM, Kreutz MR, Karpova A. Jacob, a Synapto-Nuclear Protein Messenger Linking N-methyl-D-aspartate Receptor Activation to Nuclear Gene Expression. Front Synaptic Neurosci. 2021 Nov 26;13:787494. doi: 10.3389/fnsyn.2021.787494. PMID: 34899262; PMCID: PMC8662305.

6: Li W, Jiang H. Nuclear Protein Condensates and Their Properties in Regulation of Gene Expression. J Mol Biol. 2022 Jan 15;434(1):167151. doi: 10.1016/j.jmb.2021.167151. Epub 2021 Jul 14. PMID: 34271007; PMCID: PMC9012237.

7: Murano C, Suzuki S, Nakamura S, Takeda H, Fukui T, Yoshioka T. Vimentin-positive and Alpha-fetoprotein-elevated Nuclear Protein of the Testis Midline Carcinoma: A Case Report and Review of the Literature. Intern Med. 2021 Nov 15;60(22):3645-3649. doi: 10.2169/internalmedicine.7019-21. Epub 2021 May 29. PMID: 34053984; PMCID: PMC8666212.

8：Murphy A, Costa M. Nuclear protein 1 imparts oncogenic potential and chemotherapeutic resistance in cancer. Cancer Lett. 2020 Dec 1;494:132-141. doi: 10.1016/j.canlet.2020.08.019. Epub 2020 Aug 22. PMID: 32835767; PMCID:PMC7958295.

9: Sakai Y, Phimsen S, Okada S, Kuwahara K. The critical role of germinal center-associated nuclear protein in cell biology, immunohematology, and hematolymphoid oncogenesis. Exp Hematol. 2020 Oct;90:30-38. doi: 10.1016/j.exphem.2020.08.007. Epub 2020 Aug 20. PMID: 32827560.

二、PEST sequence papers by title only

1: Garcia-Garcia J, Overå KS, Khan W, Sjøttem E. Generation of the short TRIM32 isoform is regulated by Lys 247 acetylation and a PEST sequence. PLoS One. 2021 May 17;16(5):e0251279. doi: 10.1371/journal.pone.0251279. PMID: 33999923; PMCID: PMC8128265.

2: Qile M, Ji Y, Houtman MJC, Veldhuis M, Romunde F, Kok B, van der Heyden MAG. Identification of a PEST Sequence in Vertebrate K_IR2.1 That Modifies Rectification. Front Physiol. 2019 Jul 5;10:863. doi: 10.3389/fphys.2019.00863. PMID: 31333502; PMCID: PMC6624654.

3: Tsukamoto Y, Maeda Y, Tamura T, Mukai T, Mitarai S, Yamamoto S, Makino M. Enhanced protective efficacy against tuberculosis provided by a recombinant urease deficient BCG expressing heat shock protein 70-major membrane protein-II having PEST sequence. Vaccine. 2016 Dec 7;34(50):6301-6308. doi: 10.1016/j.vaccine.2016.10.069. Epub 2016 Nov 12. PMID: 27847173.

4: Li B, Hu Q, Xu R, Ren H, Fei E, Chen D, Wang G. Hax-1 is rapidly degraded by the proteasome dependent on its PEST sequence. BMC Cell Biol. 2012 Jul 24;13:20. doi: 10.1186/1471-2121-13-20. PMID: 22827267; PMCID: PMC3432607.

5: Sue SC, Dyson HJ. Interaction of the IkappaBalpha C-terminal PEST sequence with NF-kappaB: insights into the inhibition of NF-kappaB DNA binding by IkappaBalpha. J Mol Biol. 2009 May 15;388(4):824-38. doi: 10.1016/j.jmb.2009.03.048. Epub 2009 Mar 24. PMID: 19327364; PMCID: PMC2688455.

6: Martinez LO, Agerholm-Larsen B, Wang N, Chen W, Tall AR. Phosphorylation of a pest sequence in ABCA1 promotes calpain degradation and is reversed by ApoA-I. J Biol Chem. 2003 Sep 26;278(39):37368-74. doi: 10.1074/jbc.M307161200. Epub 2003 Jul 17. PMID: 12869555.

7: Wang N, Chen W, Linsel-Nitschke P, Martinez LO, Agerholm-Larsen B, Silver DL, Tall AR. A PEST sequence in ABCA1 regulates degradation by calpain protease and stabilization of ABCA1 by apoA-I. J Clin Invest. 2003 Jan;111(1):99-107. doi: 10.1172/JCI16808. PMID: 12511593; PMCID: PMC151839.

8: Chen EY, Clarke DM. The PEST sequence does not contribute to the stability of the cystic fibrosis transmembrane conductance regulator. BMC Biochem. 2002 Oct 2;3:29. doi: 10.1186/1471-2091-3-29. Epub 2002 Oct 2. PMID: 12361483; PMCID: PMC130031.

9: Marchal C, Haguenauer-Tsapis R, Urban-Grimal D. Casein kinase I-dependent phosphorylation within a PEST sequence and ubiquitination at nearby lysines signal endocytosis of yeast uracil permease. J Biol Chem. 2000 Aug 4;275(31):23608-14. doi: 10.1074/jbc.M001735200. PMID: 10811641.

10: Van Antwerp DJ, Verma IM. Signal-induced degradation of I(kappa)B(alpha): association with NF-kappaB and the PEST sequence in I(kappa)B(alpha) are not required. Mol Cell Biol. 1996 Nov;16(11):6037-45. doi: 10.1128/MCB.16.11.6037. PMID: 8887633; PMCID: PMC231606.

11: MacKichan ML, Logeat F, Israël A. Phosphorylation of p105 PEST sequence via a redox-insensitive pathway up-regulates processing of p50 NF-kappaB. J Biol Chem. 1996 Mar 15;271(11):6084-91. doi: 10.1074/jbc.271.11.6084. PMID: 8626394.

12: Barbato R, Shipton CA, Giacometti GM, Barber J. New evidence suggests that the initial photoinduced cleavage of the D1-protein may not occur near the PEST sequence. FEBS Lett. 1991 Sep 23;290(1-2):162-6. doi: 10.1016/0014-5793(91)81250-c. PMID: 1915869.

三、PCNP papers by title /abstract

1: Chen YG, Liu HX, Hong Y, Dong PZ, Liu SY, Gao YR, Lu D, Li T, Wang DY, Wu DD, Ji XY. PCNP is a novel regulator of proliferation, migration, and invasion in human thyroid cancer. Int J Biol Sci. 2022 May 16;18(9):3605-3620. doi: 10.7150/ijbs.70394. PMID: 35813472; PMCID: PMC9254465.

2: Han ZP, Yang Y, Chen HY, Zhong MY, Zhuang GH. TIPE2 and PCNP expression abnormalities in peripheral blood mononuclear cells associated with disease activity in rheumatoid arthritis: a meta-analysis. Eur Rev Med Pharmacol Sci. 2021 Feb;25(3):1242-1249. doi: 10.26355/eurrev_202102_24828. PMID: 33629294.

3: Dong P, Fu H, Chen L, Zhang S, Zhang X, Li H, Wu D, Ji X. PCNP promotes ovarian cancer progression by accelerating β-catenin nuclear accumulation and triggering EMT transition. J Cell Mol Med. 2020 Jul;24(14):8221-8235. doi: 10.1111/jcmm.15491. Epub 2020 Jun 16. PMID: 32548978; PMCID: PMC7348179.

4: Afzal A, Sarfraz M, Li GL, Ji SP, Duan SF, Khan NH, Wu DD, Ji XY. Taking a holistic view of PEST-containing nuclear protein (PCNP) in cancer biology. Cancer Med. 2019 Oct;8(14):6335-6343. doi: 10.1002/cam4.2465. Epub 2019 Sep 5. PMID: 31487123; PMCID: PMC6797571.

5: Wang DY, Hong Y, Chen YG, Dong PZ, Liu SY, Gao YR, Lu D, Li HM, Li T, Guo JC, He F, Ren XQ, Sun SY, Wu DD, Duan SF, Ji XY. PEST-containing nuclear protein regulates cell proliferation, migration, and invasion in lung adenocarcinoma. Oncogenesis. 2019 Mar 14;8(3):22. doi: 10.1038/s41389-019-0132-4. PMID:30872582; PMCID: PMC6418141.

6: Wu DD, Gao YR, Li T, Wang DY, Lu D, Liu SY, Hong Y, Ning HB, Liu JP, Shang J, Shi JF, Wei JS, Ji XY. PEST-containing nuclear protein mediates the proliferation, migration, and invasion of human neuroblastoma cells through MAPK and PI3K/AKT/mTOR signaling pathways. BMC Cancer. 2018 May 2;18(1):499. doi: 10.1186/s12885-018-4391-9. PMID: 29716528; PMCID: PMC5930684.

7: Xiao W, Pacyna-Gengelbach M, Schlüns K, An Q, Gao Y, Cheng S, Petersen I. Differentially expressed genes associated with human lung cancer. Oncol Rep. 2005 Jul;14(1):229-34. PMID: 15944794.

8: Graham CM, Thomas DB. Differential analysis of CD4+ Th memory clones with identical T-cell receptor (TCR)-alphabeta rearrangement (non-transgenic), but distinct lymphokine phenotype, reveals diverse and novel gene expression. Immunology. 2004 Oct;113(2):194-202. doi: 10.1111/j.1365-2567.2004.01953.x.PMID: 15379980; PMCID: PMC1782562.

9: Mori T, Li Y, Hata H, Kochi H. NIRF is a ubiquitin ligase that is capable of ubiquitinating PCNP, a PEST-containing nuclear protein. FEBS Lett. 2004 Jan 16;557(1-3):209-14. doi: 10.1016/s0014-5793(03)01495-9. PMID: 14741369.

10: Mori T, Li Y, Hata H, Ono K, Kochi H. NIRF, a novel RING finger protein, is involved in cell-cycle regulation. Biochem Biophys Res Commun. 2002 Aug 23;296(3):530-6. doi: 10.1016/s0006-291x(02)00890-2. PMID: 12176013.

11: Rampazzo A, Pivotto F, Occhi G, Tiso N, Bortoluzzi S, Rowen L, Hood L, Nava A, Danieli GA. Characterization of C14orf4, a novel intronless human gene containing a polyglutamine repeat, mapped to the ARVD1 critical region. Biochem Biophys Res Commun. 2000 Nov 30;278(3):766-74. doi: 10.1006/bbrc.2000.3883. PMID: 11095982.

12: Williams M, Lyu MS, Yang YL, Lin EP, Dunbrack R, Birren B, Cunningham J, Hunter K. Ier5, a novel member of the slow-kinetics immediate-early genes. Genomics. 1999 Feb 1;55(3):327-34. doi: 10.1006/geno.1998.5679. PMID: 10049588.

13: Jones MH, Numata M, Shimane M. Identification and characterization of BRDT: A testis-specific gene related to the bromodomain genes RING3 and Drosophila fsh. Genomics. 1997 Nov 1;45(3):529-34. doi: 10.1006/geno.1997.5000. PMID: 9367677.